v0.21.1-fastapi
This commit is contained in:
@@ -203,7 +203,6 @@ class Canvas(Graph):
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self.history = []
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self.retrieval = []
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self.memory = []
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for k in self.globals.keys():
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if isinstance(self.globals[k], str):
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self.globals[k] = ""
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@@ -292,7 +291,6 @@ class Canvas(Graph):
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"thoughts": self.get_component_thoughts(self.path[i])
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})
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_run_batch(idx, to)
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# post processing of components invocation
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for i in range(idx, to):
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cpn = self.get_component(self.path[i])
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@@ -393,7 +391,6 @@ class Canvas(Graph):
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self.path = path
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yield decorate("user_inputs", {"inputs": another_inputs, "tips": tips})
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return
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self.path = self.path[:idx]
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if not self.error:
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yield decorate("workflow_finished",
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@@ -346,7 +346,11 @@ Respond immediately with your final comprehensive answer.
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return "Error occurred."
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def reset(self):
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def reset(self, temp=False):
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"""
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Reset all tools if they have a reset method. This avoids errors for tools like MCPToolCallSession.
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"""
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for k, cpn in self.tools.items():
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cpn.reset()
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if hasattr(cpn, "reset") and callable(cpn.reset):
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cpn.reset()
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+258
-257
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+42
-2
@@ -53,12 +53,13 @@ class ExeSQLParam(ToolParamBase):
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self.max_records = 1024
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def check(self):
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self.check_valid_value(self.db_type, "Choose DB type", ['mysql', 'postgres', 'mariadb', 'mssql', 'IBM DB2'])
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self.check_valid_value(self.db_type, "Choose DB type", ['mysql', 'postgres', 'mariadb', 'mssql', 'IBM DB2', 'trino'])
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self.check_empty(self.database, "Database name")
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self.check_empty(self.username, "database username")
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self.check_empty(self.host, "IP Address")
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self.check_positive_integer(self.port, "IP Port")
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self.check_empty(self.password, "Database password")
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if self.db_type != "trino":
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self.check_empty(self.password, "Database password")
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self.check_positive_integer(self.max_records, "Maximum number of records")
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if self.database == "rag_flow":
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if self.host == "ragflow-mysql":
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@@ -123,6 +124,45 @@ class ExeSQL(ToolBase, ABC):
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r'PWD=' + self._param.password
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)
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db = pyodbc.connect(conn_str)
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elif self._param.db_type == 'trino':
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try:
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import trino
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from trino.auth import BasicAuthentication
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except Exception:
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raise Exception("Missing dependency 'trino'. Please install: pip install trino")
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def _parse_catalog_schema(db: str):
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if not db:
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return None, None
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if "." in db:
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c, s = db.split(".", 1)
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elif "/" in db:
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c, s = db.split("/", 1)
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else:
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c, s = db, "default"
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return c, s
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catalog, schema = _parse_catalog_schema(self._param.database)
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if not catalog:
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raise Exception("For Trino, `database` must be 'catalog.schema' or at least 'catalog'.")
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http_scheme = "https" if os.environ.get("TRINO_USE_TLS", "0") == "1" else "http"
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auth = None
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if http_scheme == "https" and self._param.password:
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auth = BasicAuthentication(self._param.username, self._param.password)
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try:
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db = trino.dbapi.connect(
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host=self._param.host,
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port=int(self._param.port or 8080),
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user=self._param.username or "ragflow",
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catalog=catalog,
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schema=schema or "default",
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http_scheme=http_scheme,
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auth=auth
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)
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except Exception as e:
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raise Exception("Database Connection Failed! \n" + str(e))
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elif self._param.db_type == 'IBM DB2':
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import ibm_db
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conn_str = (
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+46
-7
@@ -85,13 +85,7 @@ class PubMed(ToolBase, ABC):
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self._retrieve_chunks(pubmedcnt.findall("PubmedArticle"),
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get_title=lambda child: child.find("MedlineCitation").find("Article").find("ArticleTitle").text,
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get_url=lambda child: "https://pubmed.ncbi.nlm.nih.gov/" + child.find("MedlineCitation").find("PMID").text,
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get_content=lambda child: child.find("MedlineCitation") \
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.find("Article") \
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.find("Abstract") \
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.find("AbstractText").text \
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if child.find("MedlineCitation")\
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.find("Article").find("Abstract") \
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else "No abstract available")
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get_content=lambda child: self._format_pubmed_content(child),)
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return self.output("formalized_content")
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except Exception as e:
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last_e = e
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@@ -104,5 +98,50 @@ class PubMed(ToolBase, ABC):
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assert False, self.output()
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def _format_pubmed_content(self, child):
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"""Extract structured reference info from PubMed XML"""
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def safe_find(path):
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node = child
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for p in path.split("/"):
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if node is None:
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return None
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node = node.find(p)
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return node.text if node is not None and node.text else None
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title = safe_find("MedlineCitation/Article/ArticleTitle") or "No title"
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abstract = safe_find("MedlineCitation/Article/Abstract/AbstractText") or "No abstract available"
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journal = safe_find("MedlineCitation/Article/Journal/Title") or "Unknown Journal"
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volume = safe_find("MedlineCitation/Article/Journal/JournalIssue/Volume") or "-"
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issue = safe_find("MedlineCitation/Article/Journal/JournalIssue/Issue") or "-"
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pages = safe_find("MedlineCitation/Article/Pagination/MedlinePgn") or "-"
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# Authors
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authors = []
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for author in child.findall(".//AuthorList/Author"):
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lastname = safe_find("LastName") or ""
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forename = safe_find("ForeName") or ""
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fullname = f"{forename} {lastname}".strip()
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if fullname:
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authors.append(fullname)
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authors_str = ", ".join(authors) if authors else "Unknown Authors"
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# DOI
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doi = None
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for eid in child.findall(".//ArticleId"):
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if eid.attrib.get("IdType") == "doi":
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doi = eid.text
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break
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return (
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f"Title: {title}\n"
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f"Authors: {authors_str}\n"
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f"Journal: {journal}\n"
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f"Volume: {volume}\n"
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f"Issue: {issue}\n"
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f"Pages: {pages}\n"
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f"DOI: {doi or '-'}\n"
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f"Abstract: {abstract.strip()}"
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)
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def thoughts(self) -> str:
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return "Looking for scholarly papers on `{}`,” prioritising reputable sources.".format(self.get_input().get("query", "-_-!"))
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@@ -18,12 +18,14 @@ import re
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from abc import ABC
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from agent.tools.base import ToolParamBase, ToolBase, ToolMeta
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from api.db import LLMType
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from api.db.services.document_service import DocumentService
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from api.db.services.dialog_service import meta_filter
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from api.db.services.knowledgebase_service import KnowledgebaseService
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from api.db.services.llm_service import LLMBundle
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from api import settings
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from api.utils.api_utils import timeout
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from rag.app.tag import label_question
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from rag.prompts.generator import cross_languages, kb_prompt
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from rag.prompts.generator import cross_languages, kb_prompt, gen_meta_filter
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class RetrievalParam(ToolParamBase):
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@@ -57,6 +59,8 @@ class RetrievalParam(ToolParamBase):
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self.empty_response = ""
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self.use_kg = False
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self.cross_languages = []
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self.toc_enhance = False
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self.meta_data_filter={}
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def check(self):
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self.check_decimal_float(self.similarity_threshold, "[Retrieval] Similarity threshold")
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@@ -116,12 +120,27 @@ class Retrieval(ToolBase, ABC):
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vars = self.get_input_elements_from_text(kwargs["query"])
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vars = {k:o["value"] for k,o in vars.items()}
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query = self.string_format(kwargs["query"], vars)
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doc_ids=[]
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if self._param.meta_data_filter!={}:
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metas = DocumentService.get_meta_by_kbs(kb_ids)
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if self._param.meta_data_filter.get("method") == "auto":
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chat_mdl = LLMBundle(self._canvas.get_tenant_id(), LLMType.CHAT)
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filters = gen_meta_filter(chat_mdl, metas, query)
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doc_ids.extend(meta_filter(metas, filters))
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if not doc_ids:
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doc_ids = None
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elif self._param.meta_data_filter.get("method") == "manual":
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doc_ids.extend(meta_filter(metas, self._param.meta_data_filter["manual"]))
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if not doc_ids:
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doc_ids = None
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if self._param.cross_languages:
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query = cross_languages(kbs[0].tenant_id, None, query, self._param.cross_languages)
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if kbs:
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query = re.sub(r"^user[::\s]*", "", query, flags=re.IGNORECASE)
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kbinfos = settings.retrievaler.retrieval(
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kbinfos = settings.retriever.retrieval(
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query,
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embd_mdl,
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[kb.tenant_id for kb in kbs],
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@@ -130,12 +149,18 @@ class Retrieval(ToolBase, ABC):
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self._param.top_n,
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self._param.similarity_threshold,
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1 - self._param.keywords_similarity_weight,
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doc_ids=doc_ids,
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aggs=False,
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rerank_mdl=rerank_mdl,
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rank_feature=label_question(query, kbs),
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)
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if self._param.toc_enhance:
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chat_mdl = LLMBundle(self._canvas._tenant_id, LLMType.CHAT)
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cks = settings.retriever.retrieval_by_toc(query, kbinfos["chunks"], [kb.tenant_id for kb in kbs], chat_mdl, self._param.top_n)
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if cks:
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kbinfos["chunks"] = cks
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if self._param.use_kg:
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ck = settings.kg_retrievaler.retrieval(query,
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ck = settings.kg_retriever.retrieval(query,
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[kb.tenant_id for kb in kbs],
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kb_ids,
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embd_mdl,
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@@ -146,7 +171,7 @@ class Retrieval(ToolBase, ABC):
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kbinfos = {"chunks": [], "doc_aggs": []}
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if self._param.use_kg and kbs:
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ck = settings.kg_retrievaler.retrieval(query, [kb.tenant_id for kb in kbs], filtered_kb_ids, embd_mdl, LLMBundle(kbs[0].tenant_id, LLMType.CHAT))
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ck = settings.kg_retriever.retrieval(query, [kb.tenant_id for kb in kbs], filtered_kb_ids, embd_mdl, LLMBundle(kbs[0].tenant_id, LLMType.CHAT))
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if ck["content_with_weight"]:
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ck["content"] = ck["content_with_weight"]
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del ck["content_with_weight"]
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